STRINGSTRING
XCC0005 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC0005" - Uncharacterized protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0005Uncharacterized protein; Predicted metal-dependent membrane protease (278 aa)    
Predicted Functional Partners:
XCC0006
Uncharacterized protein; Zn-dependent protease with chaperone function (268 aa)
              0.709
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (814 aa)
   
        0.669
uptE
Outer membrane protein; RTX toxins and related Ca2+-binding proteins (296 aa)
   
          0.641
XCC0007
Uncharacterized protein; FOG- TPR repeat (398 aa)
 
        0.588
XCC1572
annotation not available (228 aa)
   
          0.587
XCC0767
annotation not available (81 aa)
   
          0.569
XCC1144
annotation not available (168 aa)
   
          0.568
XCC2621
annotation not available (208 aa)
   
          0.554
XCC3958
annotation not available (150 aa)
   
          0.537
XCC2332
annotation not available (172 aa)
   
          0.531
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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