• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
exbD3 protein (Xanthomonas campestris campestris) - STRING interaction network
"exbD3" - Macromolecule import protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbD3Macromolecule import protein; Biopolymer transport protein (136 aa)    
Predicted Functional Partners:
exbB1
Biopolymer transport protein ExbB; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity) (253 aa)
 
  0.919
tolQ
TolQ protein; Biopolymer transport proteins (259 aa)
 
 
  0.876
tonB1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity) (223 aa)
 
 
  0.702
XCC1593
Periplasmic protein TonB, links inner and outer membranes (217 aa)
 
 
  0.696
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (99 aa)
   
        0.690
tonB
Periplasmic protein TonB, links inner and outer membranes (224 aa)
 
 
  0.670
exbB2
annotation not available (222 aa)
   
 
  0.650
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (293 aa)
 
        0.645
XCC2081
annotation not available (140 aa)
 
 
  0.637
ompP6
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (172 aa)
 
 
  0.614
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (19%) [HD]