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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0050Outer membrane receptor proteins, mostly Fe transport (897 aa)    
Predicted Functional Partners:
XCC0049
Uncharacterized protein conserved in bacteria
 
     0.933
avrBs2
Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable
 
     0.808
XCC2382
annotation not available
  
     0.751
XCC2078
annotation not available
 
 
 0.731
hrpF
HrpF protein; Pathogenicity-related export of effector proteins to host plants
  
     0.675
XCC4237
Oar protein; Outer membrane receptor for ferrienterochelin and colicins
  
  
 0.665
hrpB1
annotation not available
  
     0.658
mopB
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family
      
 0.640
mxaF2
Glucose dehydrogenase
  
    0.630
hrcQ
HrcQ protein; Type III secretory pathway protein
  
     0.623
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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