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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avrBs2Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable (718 aa)    
Predicted Functional Partners:
XCC0050
Outer membrane receptor proteins, mostly Fe transport
 
     0.808
XCC0049
Uncharacterized protein conserved in bacteria
 
     0.804
XCC2403
annotation not available
  
 
   0.796
gumG
GumG protein; Fucose 4-O-acetylase and related acetyltransferases
  
   
 0.790
hrpB1
annotation not available
  
   
 0.788
hrpF
HrpF protein; Pathogenicity-related export of effector proteins to host plants
  
   
 0.780
hrpB5
HrpB5 protein; Flagellar biosynthesis/type III secretory pathway protein
  
   
 0.779
hrpD5
annotation not available
  
   
 0.773
hpaP
annotation not available
  
   
 0.770
XCC3797
annotation not available
  
     0.762
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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