STRINGSTRING
XCC0086 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC0086" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0086annotation not available (286 aa)    
Predicted Functional Partners:
XCC0085
annotation not available (288 aa)
 
          0.863
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (436 aa)
   
 
  0.604
XCC0084
annotation not available (152 aa)
              0.597
XCC1970
Uncharacterized protein conserved in bacteria (372 aa)
 
          0.512
wxcK
Aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family (367 aa)
     
 
  0.495
XCC1671
Aminotransferase; Amination of a sugar nucleotide precusror of an unidentified cell surface carbohydrate; Belongs to the DegT/DnrJ/EryC1 family (380 aa)
     
 
  0.495
vioA
Nucleotide sugar transaminase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family (416 aa)
     
 
  0.495
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (89 aa)
     
      0.482
pqqD
Coenzyme PQQ synthesis protein D; Pyrroloquinoline quinone (PQQ) biosynthesis (92 aa)
     
      0.434
pqqE
Coenzyme PQQ synthesis protein E; Predicted Fe-S oxidoreductases; Belongs to the radical SAM superfamily. PqqE family (376 aa)
     
      0.434
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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