close STRING Data Update
The upcoming version of STRING is available for preview: it includes new data, new enrichment categories (e.g. diseases and tissues) and covers 14000 fully sequenced genomes.
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0087annotation not available (590 aa)    
Predicted Functional Partners:
XCC0088
annotation not available
 
     0.927
XCC0089
annotation not available
 
     0.924
XCC0092
annotation not available
 
     0.873
XCC0090
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
 
     0.847
XCC0093
TldD protein; Predicted Zn-dependent proteases and their inactivated homologs
 
     0.816
XCC0094
TldD protein; Predicted Zn-dependent proteases and their inactivated homologs
 
     0.790
XCC0095
TldD protein; Predicted Zn-dependent proteases and their inactivated homologs
 
     0.716
CAP52472.1
Type V secretory pathway, adhesin AidA
  
     0.604
CAP52000.1
Phage-related minor tail protein
  
     0.593
XCC0091
Methanol dehydrogenase regulator; MoxR-like ATPases
 
     0.504
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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