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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0093TldD protein; Predicted Zn-dependent proteases and their inactivated homologs (444 aa)    
Predicted Functional Partners:
XCC0094
TldD protein; Predicted Zn-dependent proteases and their inactivated homologs
 
     0.973
XCC0092
annotation not available
 
     0.969
XCC0088
annotation not available
 
   
 0.896
XCC0090
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
 
     0.881
XCC0095
TldD protein; Predicted Zn-dependent proteases and their inactivated homologs
 
    0.872
XCC0089
annotation not available
 
     0.850
XCC0087
annotation not available
 
     0.816
XCC0091
Methanol dehydrogenase regulator; MoxR-like ATPases
 
     0.727
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
    
 
 0.410
rpoH
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
    
 
 0.410
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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