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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0095TldD protein; Predicted Zn-dependent proteases and their inactivated homologs (553 aa)    
Predicted Functional Partners:
XCC0093
TldD protein; Predicted Zn-dependent proteases and their inactivated homologs
 
    0.872
XCC0092
annotation not available
 
     0.798
XCC0088
annotation not available
 
   
 0.795
XCC0087
annotation not available
 
     0.716
XCC0090
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
 
     0.701
XCC0089
annotation not available
 
     0.628
CAP49434.1
Unknown
       0.536
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
    
 
 0.410
rpoH
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
    
 
 0.410
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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