STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yncDIron transporter; Outer membrane receptor proteins mostly Fe transport (727 aa)    
Predicted Functional Partners:
tyrB
Aminotransferase; Aspartate/tyrosine/aromatic aminotransferase
       0.596
fecR
Fe2+-dicitrate sensor, membrane component
  
 
 0.541
XCC3083
Glucose dehydrogenase
 
    0.493
XCC0099
annotation not available
       0.492
XCC1575
Glucose dehydrogenase
 
    0.453
XCC1436
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family
      
 0.452
fhuE
Outer membrane receptor proteins, mostly Fe transport
  
   
 0.451
fpvA1
Outer membrane receptor for monomeric catechols
  
   
 0.417
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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