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yncD protein (Xanthomonas campestris campestris) - STRING interaction network
"yncD" - Iron transporter in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yncDIron transporter; Outer membrane receptor proteins mostly Fe transport (727 aa)    
Predicted Functional Partners:
tyrB
Aminotransferase; Aspartate/tyrosine/aromatic aminotransferase (400 aa)
              0.596
fecR
Fe2+-dicitrate sensor, membrane component (341 aa)
   
 
  0.541
XCC3083
Glucose dehydrogenase (824 aa)
 
        0.493
XCC0099
annotation not available (131 aa)
              0.492
XCC1575
Glucose dehydrogenase (820 aa)
 
        0.453
XCC1436
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (241 aa)
           
  0.452
fhuE
Outer membrane receptor proteins, mostly Fe transport (754 aa)
   
     
  0.451
fpvA1
Outer membrane receptor for monomeric catechols (738 aa)
   
     
  0.417
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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