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ku protein (Xanthomonas campestris campestris) - STRING interaction network
"ku" - Non-homologous end joining protein Ku in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kuNon-homologous end joining protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (313 aa)    
Predicted Functional Partners:
dnl
ATP-dependent DNA ligase (1001 aa)
 
   
  0.986
lig2
ATP-dependent DNA ligase (849 aa)
 
   
  0.916
XCC0103
annotation not available (182 aa)
              0.898
CAP49442.1
annotation not available (53 aa)
              0.629
XCC2638
Uncharacterized protein (330 aa)
 
          0.515
XCC2752
Uncharacterized protein (299 aa)
 
          0.491
XCC1290
ATP-dependent DNA ligase (534 aa)
 
   
  0.479
XCC1079
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (300 aa)
   
        0.479
XCC0034
Uncharacterized protein; Predicted DNA topoisomerase IB (443 aa)
 
          0.439
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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