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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgKSugar kinases, ribokinase family (340 aa)    
Predicted Functional Partners:
eda
KDPG and KHG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase
 
 0.992
edd
Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family
  
 
 0.912
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Dehydrogenases with different specificities
 
 0.909
rpe
Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family
  
 0.859
rspA
Starvation sensing protein; Enolase; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
 
 0.852
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Belongs to the KduI family
 
  
 0.684
uxaC
Glucuronate isomerase
 
   
 0.675
dgoA
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase
 
  
 0.633
XCC0117
Uncharacterized protein; Lysophospholipase L1 and related esterases
       0.507
XCC0119
Outer membrane receptor proteins mostly Fe transport
 
     0.496
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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