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STRINGSTRING
pme1 protein (Xanthomonas campestris campestris) - STRING interaction network
"pme1" - Pectinesterase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pme1Pectinesterase; Pectin methylesterase (325 aa)    
Predicted Functional Partners:
pel4
Pectate lyase E; Degradation of external pectate (251 aa)
     
  0.997
pglA1
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family (466 aa)
 
  0.993
pel2
annotation not available (380 aa)
   
  0.990
pel3
Pectate lyase (377 aa)
   
  0.990
pglA2
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family (556 aa)
 
  0.986
pel1
Pectate lyase (353 aa)
   
  0.985
XCC0142
Uncharacterized protein; Lysophospholipase L1 and related esterases (304 aa)
     
  0.962
XCC0154
Rhamnogalacturonan acetylesterase; Lysophospholipase L1 and related esterases (381 aa)
     
  0.950
CAP49462.1
Unknown (90 aa)
 
          0.935
pme2
Pectinesterase; Pectin methylesterase (401 aa)
   
   
0.859
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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