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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pel4Pectate lyase E; Degradation of external pectate (251 aa)    
Predicted Functional Partners:
pme1
Pectinesterase; Pectin methylesterase
   
 0.997
CAP49462.1
Unknown
   
 0.995
XCC0120
Outer membrane receptor proteins, mostly Fe transport
 
   
 0.950
XCC0142
Uncharacterized protein; Lysophospholipase L1 and related esterases
     0.934
XCC0154
Rhamnogalacturonan acetylesterase; Lysophospholipase L1 and related esterases
 
     0.706
XCC1115
annotation not available
  
     0.666
hrpW
annotation not available
  
   
 0.648
xcc-b100_1236
Acetyltransferases, including N-acetylases of ribosomal proteins
  
     0.642
xylB5
Xylosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family
 
  
 0.640
XCC1196
Uncharacterized protein conserved in bacteria
  
     0.617
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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