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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0123Uncharacterized protein (1283 aa)    
Predicted Functional Partners:
XCC0119
Outer membrane receptor proteins mostly Fe transport
 
     0.804
XCC0120
Outer membrane receptor proteins, mostly Fe transport
 
     0.761
mhpD
2-keto-4-pentenoate hydratase
 
     0.735
XCC3871
Mn2+-dependent serine/threonine protein kinase
  
     0.616
XCC1750
Outer membrane receptor for monomeric catechols
  
     0.607
pel4
Pectate lyase E; Degradation of external pectate
 
   
 0.587
XCC1754
Uncharacterized protein; Beta-galactosidase
 
     0.562
CAP49462.1
Unknown
       0.543
XCC3162
Glycosyl hydrolase; Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family
 
     0.534
XCC1749
Outer membrane receptor proteins mostly Fe transport
  
     0.534
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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