STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP49482.1Transposase and inactivated derivatives (77 aa)    
Predicted Functional Partners:
XCC0136
Transposase and inactivated derivatives
     0.919
CAP49483.1
annotation not available
       0.845
CAP49508.1
Transposase and inactivated derivatives, IS5 family
 
     0.777
CAP49897.1
Transposase and inactivated derivatives, IS5 family
 
     0.777
CAP50540.1
Transposase and inactivated derivatives
 
     0.777
XCC1177
Transposase and inactivated derivatives
 
     0.777
CAP52202.1
Transposase and inactivated derivatives
 
     0.777
XCC1636
Transposase and inactivated derivatives
 
     0.777
CAP50571.1
Transposase and inactivated derivatives
 
     0.776
CAP51710.1
Transposase and inactivated derivatives
 
     0.775
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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