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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctMTRAP-type C4-dicarboxylate transport system large permease component (427 aa)    
Predicted Functional Partners:
dctP
TRAP-type C4-dicarboxylate transport system,periplasmic component
  
 0.992
dctQ
TRAP-type C4-dicarboxylate transport system small permease component
 
  
 0.982
mhpD
2-keto-4-pentenoate hydratase
 
     0.815
uxuB
Mannitol-1-phosphate/altronate dehydrogenases
   
 0.802
uxaC
Glucuronate isomerase
     0.673
xylB3
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family
       0.612
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Belongs to the KduI family
 
     0.594
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Dehydrogenases with different specificities
 
     0.575
apeH
Xylanase; Esterase/lipase
       0.558
chlE
Carboxylic ester hydrolase; Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family
       0.529
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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