STRINGSTRING
dctM protein (Xanthomonas campestris campestris) - STRING interaction network
"dctM" - TRAP-type C4-dicarboxylate transport system large permease component in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctMTRAP-type C4-dicarboxylate transport system large permease component (427 aa)    
Predicted Functional Partners:
dctP
TRAP-type C4-dicarboxylate transport system,periplasmic component (332 aa)
   
  0.992
dctQ
TRAP-type C4-dicarboxylate transport system small permease component (173 aa)
 
   
  0.982
mhpD
2-keto-4-pentenoate hydratase (308 aa)
 
          0.815
uxuB
Mannitol-1-phosphate/altronate dehydrogenases (506 aa)
     
  0.802
uxaC
Glucuronate isomerase (471 aa)
          0.673
xylB3
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family (526 aa)
              0.612
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Belongs to the KduI family (284 aa)
 
          0.594
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Dehydrogenases with different specificities (251 aa)
 
          0.575
apeH
Xylanase; Esterase/lipase (353 aa)
              0.558
chlE
Carboxylic ester hydrolase; Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family (540 aa)
              0.529
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (12%) [HD]