close STRING Data Update
The upcoming version of STRING is available for preview: it includes new data, new enrichment categories (e.g. diseases and tissues) and covers 14000 fully sequenced genomes.
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduD2-deoxy-D-gluconate 3-dehydrogenase; Dehydrogenases with different specificities (251 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Belongs to the KduI family
 
 0.994
rpi2
Ribose 5-phosphate isomerase RpiB
 
  
 0.954
rspA
Starvation sensing protein; Enolase; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 0.928
kdgK
Sugar kinases, ribokinase family
 
 0.909
gnd
6-phosphogluconate dehydrogenase
     
 0.823
rpe
Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family
     
 0.805
rpi1
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
   
 
  0.801
dctM
TRAP-type C4-dicarboxylate transport system large permease component
 
     0.575
fabF1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
 
 
 0.575
mhpD
2-keto-4-pentenoate hydratase
 
   
 0.572
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (9%) [HD]