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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fpvA1Outer membrane receptor for monomeric catechols (738 aa)    
Predicted Functional Partners:
fpvA2
Outer membrane receptor proteins, mostly Fe transport
 
  
 0.673
XCC0251
annotation not available
 
  
 0.662
XCC3596
Uncharacterized iron-regulated membrane protein
 
  
 0.653
fecR
Fe2+-dicitrate sensor, membrane component
 
  
 0.572
XCC0250
annotation not available
 
     0.561
phuR
Outer membrane receptor proteins, mostly Fe transport
  
  
 0.556
XCC0252
annotation not available
 
     0.554
XCC2385
Outer membrane receptor proteins mostly Fe transport
  
  
 0.512
fecA1
Citrate-dependent iron transporter; Outer membrane receptor for Fe3+-dicitrate
    
 
 0.489
XCC1566
Uncharacterized protein; Predicted hydrolase of the alpha/beta superfamily
 
    0.481
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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