STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yehZABC transporter amino acid permease; Glycine betaine/choline-binding ABC transporter components (490 aa)    
Predicted Functional Partners:
yehX
ABC transporter ATP-binding protein; ABC-type sugar transport systems, ATPase components
 0.999
XCC0597
Cystathionine beta-synthase; Cysteine synthase
  
  
 0.722
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth; Belongs to the IMPDH/GMPR family
  
  
 0.684
kdsD
Arabinose 5-phosphate isomerase; Predicted sugar phosphate isomerase involved in capsule formation
  
  
 0.680
XCC0088
annotation not available
     
 0.651
XCC0163
Ca2+-binding protein (EF-Hand superfamily)
       0.651
XCC0162
Fatty-acid desaturase
       0.580
XCC0167
Uncharacterized protein
 
    0.560
XCC0168
Uncharacterized protein
 
     0.550
betT
Choline-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family
     
 0.538
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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