close STRING Data Update
The upcoming version of STRING is available for preview: it includes new data, new enrichment categories (e.g. diseases and tissues) and covers 14000 fully sequenced genomes.
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0218AMP-ligase; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II (550 aa)    
Predicted Functional Partners:
dhaA
Haloalkane dehalogenase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
  
 0.970
XCC0219
NAD(P)H steroid dehydrogenase; Nucleoside-diphosphate-sugar epimerases
 
  
 0.874
fabH1
3-oxoacyl-[acyl-carrier-protein] synthase III
 
   
 0.849
CAP49569.1
annotation not available
       0.845
XCC4008
Predicted acyltransferase
     
 0.602
XCC4001
Halogenase; Dehydrogenases (flavoproteins)
     
 0.600
XCC4005
Membrane protein; Predicted exporter
     
 0.596
rapK
annotation not available
  
  
 0.593
acpP1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family
   
 
 0.558
acpP2
Acyl carrier protein
   
 
 0.558
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: medium (49%) [HD]