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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcRTranscriptional regulator (318 aa)    
Predicted Functional Partners:
XCC0235
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
 
    0.801
aceB
Malate synthase
       0.721
XCC0234
Uncharacterized protein; Predicted enzyme related to lactoylglutathione lyase
       0.623
XCC2627
Transcriptional regulator
 
   
 0.548
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
   
   0.500
XCC0439
annotation not available
  
     0.456
CAP52113.1
annotation not available
  
     0.453
CAP52114.1
annotation not available
  
     0.453
CAP52116.1
annotation not available
  
     0.453
XCC1437
Transcriptional regulator
  
     0.452
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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