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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mccBAcyl-CoA carboxyltransferase beta chain; Leucine degradation (536 aa)    
Predicted Functional Partners:
ivd
Acyl-CoA dehydrogenase; Leucine degradation
 
 0.997
mccA
Biotin carboxylase; Leucine degradation
 0.992
XCC1833
Enoyl-CoA hydratase/carnithine racemase
 
 0.970
fadB3
Enoyl-CoA hydratase/carnithine racemase; 3-hydroxyacyl-CoA dehydrogenase
  
 
 0.967
mvaB
Hydroxymethylglutaryl-CoA lyase; Isopropylmalate/homocitrate/citramalate synthases
 
 0.877
fadB2
3-hydroxyacyl-CoA dehydrogenase
  
  
 0.685
XCC0247
Transcriptional regulator
     
 0.602
fadE4
Acyl-CoA dehydrogenases
  
 0.579
fadB1
3-hydroxyacyl-CoA dehydrogenase type II; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
     0.572
mdcA
annotation not available
  
 
 0.570
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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