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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0254Cytochrome c5 (172 aa)    
Predicted Functional Partners:
XCC3398
Cytochrome c553
 
  
 0.848
petC
Cytochrome c1
  
   
 0.727
cycM
Cytochrome c553
 
   
 0.596
XCC3028
Uncharacterized protein; Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold
  
     0.589
copA
Putative multicopper oxidases
   
 
 0.554
XCC0255
Nuclease; Predicted extracellular nuclease
 
     0.544
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
  
   
 0.456
XCC2144
Cytochrome c553
 
   
 0.452
XCC0253
annotation not available
       0.432
XCC2318
annotation not available
  
     0.430
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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