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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0255Nuclease; Predicted extracellular nuclease (572 aa)    
Predicted Functional Partners:
XCC1140
Uncharacterized protein conserved in bacteria
     0.789
XCC0521
Ribonuclease; Endonuclease I
   
 0.785
XCC4234
Glycerophosphoryl diester phosphodiesterase
 
  
 0.639
phoD1
Phosphodiesterase/alkaline phosphatase D
 
  
 0.621
phoD2
Uncharacterized protein; Phosphodiesterase/alkaline phosphatase D
 
  
 0.600
sulP
Sulfate permease and related transporters (MFS superfamily)
   
    0.555
XCC0254
Cytochrome c5
 
     0.544
XCC1774
Predicted phosphatase
 
  
 0.539
cls1
Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
     
 0.492
cls6
Cardiolipin synthetase; Phosphatidylserine/phosphatidylglycerophosphate
     
 0.492
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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