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hrpB protein (Xanthomonas campestris campestris) - STRING interaction network
"hrpB" - ATP-dependent RNA helicase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
hrpBATP-dependent RNA helicase; HrpA-like helicases (836 aa)    
Predicted Functional Partners:
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA; Belongs to the DEAD box helicase family. RhlB subfamily (573 aa)
   
 
  0.821
hrpG
HrpG protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (262 aa)
           
  0.589
hrpF
HrpF protein; Pathogenicity-related export of effector proteins to host plants (921 aa)
           
  0.583
hrpX
HrpX protein; AraC-type DNA-binding domain-containing proteins (476 aa)
           
  0.582
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (705 aa)
     
 
  0.570
tsr1
Chemotaxis protein; FOG- HAMP domain (705 aa)
              0.567
fliF
Flagellar M-ring protein; The M ring may be actively involved in energy transduction (573 aa)
           
  0.563
rhlE2
Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family (462 aa)
   
 
  0.532
rhlE1
Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family (430 aa)
   
 
  0.518
ruvA
Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB (194 aa)
       
 
  0.516
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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