STRINGSTRING
opdE protein (Xanthomonas campestris campestris) - STRING interaction network
"opdE" - Transcriptional regulator in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opdETranscriptional regulator; Arabinose efflux permease (398 aa)    
Predicted Functional Partners:
mexF
Cation/multidrug efflux pump (1075 aa)
   
 
 
  0.668
XCC0285
Transcriptional regulator (329 aa)
 
      0.665
emrA
MFS transporter; Permeases of the major facilitator superfamily (473 aa)
   
   
  0.656
XCC2678
Transcriptional regulator (304 aa)
 
      0.619
norM
Probable multidrug resistance protein NorM; Multidrug efflux pump (458 aa)
           
  0.593
XCC2677
Uncharacterized conserved protein contains double-stranded beta-helix domain (157 aa)
 
          0.453
raxC
Outer membrane protein (457 aa)
           
  0.430
acrB
Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1032 aa)
   
 
 
  0.402
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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