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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0297Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit (350 aa)    
Predicted Functional Partners:
vanB
Vanillate O-demethylase oxidoreductase; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
  
 0.987
pobB
Phenoxybenzoate dioxygenase beta subunit; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
 
  
 0.888
XCC0298
Transcriptional regulator
 
     0.874
XCC0801
annotation not available
 
 
 0.786
glpR
Glycerol-3-phosphate regulon repressor; Transcriptional regulators of sugar metabolism
      
 0.702
nasE
Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
 
 
 0.626
XCC3153
Uncharacterized protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
  
 
 0.572
bedB
Benzene 1,2-dioxygenase, ferredoxin protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
  
 
 0.572
hpyO
FAD-dependent urate hydroxylase; Catalyzes the hydroxylation of urate to 5- hydroxyisourate (HIU). Is likely to be involved in the urate degradation pathway to allantoin. Is slightly more efficient (about 2.6 times) with NADPH than NADH as the electron donor
 
     0.569
XCC0357
Uncharacterized protein conserved in bacteria
  
   
 0.508
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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