STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0300annotation not available (225 aa)    
Predicted Functional Partners:
soxR
Predicted transcriptional regulators
      
 0.711
dauE
Aklaviketone reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
  
   0.641
CAP52025.1
Integrase
  
     0.637
XCC2467
Uncharacterized protein; Glycogen debranching enzyme
  
   0.632
CAP52466.1
ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
  
     0.581
XCC2179
Two-component system sensor protein; Predicted periplasmic ligand-binding sensor domain
  
     0.568
mobL1
Putative conjugal transfer protein; ATP-dependent exoDNAse (exonuclease V), alpha subunit
  
     0.562
XCC3077
annotation not available
  
     0.560
XCC1138
annotation not available
  
     0.527
XCC1012
Uncharacterized protein
  
     0.516
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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