STRINGSTRING
ynfM protein (Xanthomonas campestris campestris) - STRING interaction network
"ynfM" - MFS transporter in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfMMFS transporter; Permeases of the major facilitator superfamily (449 aa)    
Predicted Functional Partners:
typA
GTP-binding elongation factor protein; Predicted membrane GTPase involved in stress response (609 aa)
           
  0.765
XCC0301
Transcriptional regulator (295 aa)
 
      0.720
glnA2
Glutamine synthetase (459 aa)
     
   
  0.578
glnA1
Glutamine synthetase (469 aa)
     
   
  0.548
glnA3
Glutamine synthetase (461 aa)
     
   
  0.491
XCC0650
Uncharacterized protein; Predicted permeases (360 aa)
           
  0.472
XCC3246
Transcriptional regulator (289 aa)
   
      0.405
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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