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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobBPhenoxybenzoate dioxygenase beta subunit; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 (372 aa)    
Predicted Functional Partners:
XCC0363
Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit
 
  
 0.995
XCC0297
Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit
 
  
 0.888
glpR
Glycerol-3-phosphate regulon repressor; Transcriptional regulators of sugar metabolism
     
 0.882
XCC0357
Uncharacterized protein conserved in bacteria
  
   
 0.784
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Protocatechuate 34-dioxygenase beta subunit
 
   
 0.663
gctA
Acyl CoA:acetate/3-ketoacid CoA transferase,alpha subunit
     
 0.645
gctB
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit
     
 0.625
XCC0372
Hydrolase; Lysophospholipase
      
 0.623
pcaD
B-ketoadipate enol-lactone hydrolase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
 
  
 0.601
bioI
annotation not available
   
 0.594
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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