STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaRTranscriptional regulator; Unnamed protein product (286 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Protocatechuate 34-dioxygenase beta subunit
 
   
 0.907
pobA
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
   
 0.889
pcaD
B-ketoadipate enol-lactone hydrolase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
 
   
 0.882
gctB
Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit
 
   
 0.850
pcaC
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
 
   
 0.840
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Adenylosuccinate lyase
 
  
 0.816
pobR
PobR regulator; AraC-type DNA-binding domain-containing proteins
  
   
 0.791
gctA
Acyl CoA:acetate/3-ketoacid CoA transferase,alpha subunit
 
   
 0.771
pcaH
Protocatechuate 34-dioxygenase beta subunit
 
   
 0.713
pcaK
MFS transporter; Permeases of the major facilitator superfamily
 
   
 0.704
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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