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comF protein (Xanthomonas campestris campestris) - STRING interaction network
"comF" - Competence protein F in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFCompetence protein F; Predicted amidophosphoribosyltransferases (243 aa)    
Predicted Functional Partners:
smf
DNA processing chain A; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake (378 aa)
 
   
  0.839
comM
Competence related protein; Predicted ATPase with chaperone activity (506 aa)
 
   
  0.801
comA
DNA uptake/competence protein; Predicted membrane metal-binding protein (796 aa)
 
   
  0.757
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family (344 aa)
              0.747
XCC0710
UPF0102 protein XCC0710; Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family (122 aa)
 
        0.626
lgt
Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (296 aa)
         
  0.591
radC4
UPF0758 protein XCC3860; DNA repair proteins; Belongs to the UPF0758 family (243 aa)
 
        0.588
radC2
DNA repair proteins (159 aa)
 
        0.584
radC3
DNA repair proteins (159 aa)
 
        0.576
bioH
Pimeloyl-[acyl-carrier protein] methyl ester esterase; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters (253 aa)
              0.575
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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