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STRINGSTRING
XCC0401 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC0401" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0401annotation not available (113 aa)    
Predicted Functional Partners:
CAP49763.1
annotation not available (94 aa)
              0.845
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (137 aa)
     
 
  0.644
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (155 aa)
       
 
  0.637
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity) (113 aa)
       
 
  0.635
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
     
 
  0.629
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (46 aa)
     
 
  0.623
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (103 aa)
     
      0.614
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family (61 aa)
     
      0.613
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (41 aa)
       
      0.609
rpmD
Ribosomal protein L30/L7E (63 aa)
       
      0.607
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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