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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0407Uncharacterized protein; FOG: GGDEF domain (597 aa)    
Predicted Functional Partners:
XCC1958
C-di-GMP phosphodiesterase A; FOG: EAL domain
 
 
 0.871
XCC1777
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
 
 
 0.784
XCC2023
Predicted signal transduction protein containing sensor and EAL domains
  
 
   0.771
vieA
Response regulator; FOG: EAL domain
 
 
 0.745
XCC3877
Predicted signal transduction protein containing sensor and EAL domains
 
     0.740
XCC2360
Signal transduction histidine kinase
 
 
 
 0.652
glmS2
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
     
 0.619
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
 
 
 
 0.616
recQ
Superfamily II DNA helicase
    
 
 0.606
thrC
Threonine synthase; Unnamed protein product
      
 0.603
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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