STRINGSTRING
virK protein (Xanthomonas campestris campestris) - STRING interaction network
"virK" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virKannotation not available (143 aa)    
Predicted Functional Partners:
XCC3193
Uncharacterized protein conserved in bacteria with a cystatin-like fold (172 aa)
   
          0.651
XCC0827
Uncharacterized protein conserved in bacteria with a cystatin-like fold (174 aa)
   
          0.650
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis (240 aa)
           
  0.630
xcsH
Type II secretion system protein H; General secretory pathway proteins G and H and related periplasmic/secreted proteins (174 aa)
           
  0.607
XCC2025
Subtilisin-like serine proteases (948 aa)
   
          0.583
fucA1
Alpha-L-fucosidase (561 aa)
           
  0.582
pefL
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (373 aa)
   
     
  0.521
XCC4206
annotation not available (118 aa)
   
          0.517
yapH
annotation not available (3961 aa)
   
          0.510
XCC1298
Subtilisin-like serine proteases (953 aa)
   
          0.507
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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