STRINGSTRING
oprN1 protein (Xanthomonas campestris campestris) - STRING interaction network
"oprN1" - Outer membrane protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprN1Outer membrane protein (490 aa)    
Predicted Functional Partners:
acrA1
Component of multidrug efflux system; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (371 aa)
 
 
  0.902
ameR
Transcriptional regulator (207 aa)
 
          0.890
acrB
Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1032 aa)
 
 
  0.878
XCC3489
Multidrug resistance efflux pump (363 aa)
 
 
  0.719
mexA
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (399 aa)
 
  0.694
pmrA
Multidrug resistance efflux pump; Membrane-fusion protein (397 aa)
 
  0.687
mexB
Cation/multidrug efflux pump (1044 aa)
 
  0.676
XCC1439
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (396 aa)
 
 
  0.673
mexF
Cation/multidrug efflux pump (1075 aa)
 
  0.637
tptC
ABC transporter ATP-binding protein; ABC-type antimicrobial peptide transport system, ATPase component (229 aa)
   
 
  0.625
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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