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STRINGSTRING
ameR protein (Xanthomonas campestris campestris) - STRING interaction network
"ameR" - Transcriptional regulator in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ameRTranscriptional regulator (207 aa)    
Predicted Functional Partners:
acrA1
Component of multidrug efflux system; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (371 aa)
 
          0.942
acrB
Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1032 aa)
 
          0.910
oprN1
Outer membrane protein (490 aa)
 
          0.890
XCC0423
Oxidoreductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family (268 aa)
 
          0.809
XCC2027
Transcriptional regulator (184 aa)
 
          0.725
virK
annotation not available (143 aa)
   
          0.470
XCC3193
Uncharacterized protein conserved in bacteria with a cystatin-like fold (172 aa)
   
          0.426
XCC0827
Uncharacterized protein conserved in bacteria with a cystatin-like fold (174 aa)
   
          0.425
CAP52009.1
Predicted transcriptional regulators (120 aa)
   
          0.409
XCC0037
Pirin-related protein; Belongs to the pirin family (296 aa)
   
 
      0.403
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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