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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0428annotation not available (127 aa)    
Predicted Functional Partners:
pdhB
Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit
       0.860
pdhA
Pyruvate/2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, eukaryotic type, alpha subunit
       0.860
pdhC
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Transposase and inactivated derivatives
       0.859
XCC2403
annotation not available
  
     0.699
XCC3897
annotation not available
  
     0.659
XCC3915
Uncharacterized protein; Hydrolases of the alpha/beta superfamily
  
     0.656
XCC3589
annotation not available
  
     0.637
oprP1
Phosphate-selective porin
  
     0.632
XCC0767
annotation not available
  
     0.617
XCC1130
Uncharacterized small membrane protein
  
     0.592
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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