STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erpAIron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG (128 aa)    
Predicted Functional Partners:
nudC
NADH pyrophosphatase; NTP pyrophosphohydrolases containing a Zn-finger probably nucleic-acid-binding; Belongs to the Nudix hydrolase family
   
   0.766
XCC0486
annotation not available
       0.743
XCC0487
Integral membrane protein CcmA involved in cell shape determination
       0.743
ygfZ
Uncharacterized protein; Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family
 
 
 0.710
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
 
  
 0.681
sufD
ABC transporter permease; ABC-type transport system involved in Fe-S cluster assembly permease component
  
 
 0.659
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins
  
 
 0.623
XCC3368
Glutaredoxin-like protein; Rhodanese-related sulfurtransferase
 
 
 0.605
XCC0490
Cobalamin biosynthesis protein CobD/CbiB
       0.604
XCC2500
Glutaredoxin; Unnamed protein product; Belongs to the glutaredoxin family. Monothiol subfamily
 
 
 0.581
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (10%) [HD]