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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC0509Uncharacterized protein; Type V secretory pathway, adhesin AidA (433 aa)    
Predicted Functional Partners:
XCC2927
Periplasmic protein TonB links inner and outer membranes
  
     0.706
XCC0508
Putative Fis-like DNA-binding protein; Factor for inversion stimulation Fis transcriptional activator; Belongs to the transcriptional regulatory Fis family
  
    0.705
XCC2919
Chemotaxis signal transduction protein
  
    0.666
XCC3498
Uncharacterized protein conserved in bacteria
  
    0.661
XCC3261
annotation not available
  
     0.641
dnl
ATP-dependent DNA ligase
  
  
 0.634
lig2
ATP-dependent DNA ligase
  
  
 0.634
fimV
FimV protein; Tfp pilus assembly protein FimV
  
     0.616
pilI
Pilus biogenesis protein; Type IV pili chemotaxis signal transduction protein
  
    0.600
XCC3262
Cell division protein ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
  
     0.564
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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