STRINGSTRING
gnl1 protein (Xanthomonas campestris campestris) - STRING interaction network
"gnl1" - Gluconolactonase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnl1Gluconolactonase (305 aa)    
Predicted Functional Partners:
XCC3592
annotation not available (172 aa)
 
          0.916
XCC2550
Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (352 aa)
   
 
    0.911
idnK
Gluconokinase; Gluconate kinase (179 aa)
   
 
  0.908
XCC1575
Glucose dehydrogenase (820 aa)
     
 
    0.901
XCC3083
Glucose dehydrogenase (824 aa)
     
 
    0.901
gnl3
Gluconolactonase (345 aa)
   
   
 
0.840
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs; Belongs to the RNase E/G family. RNase E subfamily (1194 aa)
           
  0.704
rng
Ribonucleases G and E (499 aa)
           
  0.704
gnl2
Gluconolactonase (300 aa)
   
          0.674
CAP49906.1
annotation not available (136 aa)
              0.629
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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