STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matCDicarboxylate carrier protein; Di- and tricarboxylate transporters (451 aa)    
Predicted Functional Partners:
mdcY
Transcriptional regulators
 
   
 0.812
mdcH
Malonyl CoA-ACP transacylase; Membrane protease subunits, stomatin/prohibitin homologs
 
     0.788
mdcG
Phosphoribosyl-dephospho-CoA transferase; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme- A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]
 
     0.614
citG
Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase
 
     0.603
mdcE
Malonate decarboxylase gamma subunit; Acetyl-CoA carboxylase alpha subunit
 
     0.583
XCC1513
Transcriptional regulator; Methylase involved in ubiquinone/menaquinone biosynthesis
  
  
 0.520
mdcD
Beta subunit of malonate decarboxylase; Acetyl-CoA carboxylase alpha subunit
 
     0.516
ptpA
Low molecular weight phosphotyrosine protein phosphatase; Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family
  
  
 0.516
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family
   
  
 0.484
fumB
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family
  
    0.449
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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