STRINGSTRING
gph1 protein (Xanthomonas campestris campestris) - STRING interaction network
"gph1" - VirP protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gph1VirP protein; Predicted phosphatases (239 aa)    
Predicted Functional Partners:
XCC2550
Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (352 aa)
   
 
    0.900
icfG
IcfG protein; Methyl-accepting chemotaxis protein (686 aa)
 
          0.868
XCC3619
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family (139 aa)
   
        0.845
XCC3620
Anti-sigma regulatory factor (Ser/Thr protein kinase) (143 aa)
              0.845
idgB
Indigoidine synthesis like protein; Predicted phosphatases (215 aa)
   
   
    0.823
XCC0584
Predicted phosphatases (216 aa)
         
 
0.800
queG
Epoxyqueuosine reductase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family (355 aa)
            0.711
CAP49938.1
annotation not available (438 aa)
              0.588
CAP49937.1
annotation not available (222 aa)
              0.588
XCC3075
annotation not available (388 aa)
   
          0.446
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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