STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP49938.1annotation not available (438 aa)    
Predicted Functional Partners:
CAP49937.1
annotation not available
 
     0.977
XCC1902
annotation not available
  
     0.747
CAP51033.1
annotation not available
  
     0.739
ptlE
Type IV secretion system, component VirB8
  
     0.720
XCC0955
Peptidyl-Asp metalloendopeptidase; Metalloprotease, specifically cleaves on the N-terminal side of aspartyl, glutamyl and cysteic acid residues
  
     0.704
trbP
annotation not available
  
     0.682
ptlF
VirB9 protein; Type IV secretory pathway, VirB9 components
  
     0.664
XCC3620
Anti-sigma regulatory factor (Ser/Thr protein kinase)
 
     0.660
icfG
IcfG protein; Methyl-accepting chemotaxis protein
 
     0.658
ptlB
VirB3 protein; Type IV secretory pathway, VirB3 components
  
     0.643
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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