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galA1 protein (Xanthomonas campestris campestris) - STRING interaction network
"galA1" - Arabinogalactan endo-14-beta-galactosidase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galA1Arabinogalactan endo-14-beta-galactosidase (333 aa)    
Predicted Functional Partners:
pel1
Pectate lyase (353 aa)
   
     
  0.762
manA
Mannan endo-1,4-beta-mannosidase; Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family (333 aa)
   
          0.735
XCC1752
Cellulase; Uncharacterized protein related to plant photosystem II stability/assembly factor (751 aa)
   
          0.711
wxcB
Putative protein kinase; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase (762 aa)
           
  0.704
pel2
annotation not available (380 aa)
   
     
  0.687
pel3
Pectate lyase (377 aa)
   
     
  0.677
xynA3
Beta-xylanase; Beta-1,4-xylanase (330 aa)
   
          0.668
pme1
Pectinesterase; Pectin methylesterase (325 aa)
   
   
  0.650
XCC0857
Xylanase; O-Glycosyl hydrolase (405 aa)
   
          0.634
cel1
Glucanase; Cellobiohydrolase A (1,4-beta-cellobiosidase A); Belongs to the glycosyl hydrolase family 6 (566 aa)
   
          0.633
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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