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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vannotation not available (136 aa)    
Predicted Functional Partners:
XCC1607
Transposase and inactivated derivatives
       0.845
XCC3461
Uncharacterized protein; ATPases of the AAA+ class
  
     0.642
XCC1606
Transposase and inactivated derivatives
       0.618
XCC0715
annotation not available
  
     0.497
wxcD
wxcD; Glycosyltransferase
  
     0.487
XCC0714
annotation not available
  
     0.486
XCC0507
Ice nucleation protein; Uncharacterized protein conserved in bacteria
  
     0.456
CAP51046.1
Putative peptidoglycan-binding domain-containing protein
  
    0.442
hrpF
HrpF protein; Pathogenicity-related export of effector proteins to host plants
  
     0.431
XCC4048
annotation not available
 
     0.411
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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