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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3554Uncharacterized protein; Fatty acid desaturase (308 aa)    
Predicted Functional Partners:
XCC3551
Uncharacterized protein; Predicted glycosyltransferases
 
   
 0.885
XCC3553
annotation not available
       0.859
XCC3552
annotation not available
       0.859
XCC3556
Aminopeptidase N
       0.633
XCC3555
Uncharacterized protein; Predicted hydrolase of the alpha/beta superfamily
  
    0.633
XCC3550
annotation not available
       0.449
XCC1302
annotation not available
  
     0.447
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family
  
  
 0.417
bioI
annotation not available
 
   
 0.408
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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