STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspC1Aminotransferase; Aspartate/tyrosine/aromatic aminotransferase (406 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
 
 0.757
thrA
Bifunctional aspartokinase/homoserine dehydrogenase I; Aspartokinases
  
 
 0.656
ptrB
Protease II
       0.608
XCC2855
Homoserine dehydrogenase; Unnamed protein product
  
 
 0.556
maeB
Malic enzyme
  
 
 0.535
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family
  
  
 0.498
XCC1590
P-protein; Prephenate dehydratase
 
  
 0.450
XCC3686
Methyltransferase; Unnamed protein product
  
  
 0.448
tyrA
Chorismate mutase/prephenate dehydrogenase; Prephenate dehydrogenase
  
  
 0.415
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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