STRINGSTRING
XCC3489 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC3489" - Multidrug resistance efflux pump in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3489Multidrug resistance efflux pump (363 aa)    
Predicted Functional Partners:
XCC3487
MFS transporter; Permeases of the major facilitator superfamily (549 aa)
   
  0.984
XCC2341
Outer membrane protein (492 aa)
 
 
  0.805
XCC3490
ElaA protein; Predicted acyltransferase (166 aa)
 
          0.796
codA
Cytosine/adenosine deaminases (151 aa)
              0.770
XCC2342
Transport protein; Permeases of the major facilitator superfamily (528 aa)
 
   
  0.724
oprN1
Outer membrane protein (490 aa)
 
 
  0.719
oprN4
Outer membrane protein (474 aa)
 
 
  0.661
ubiE1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) (295 aa)
              0.629
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily (526 aa)
 
 
  0.623
lrp
Leucine responsive regulatory protein; Transcriptional regulators (159 aa)
     
   
  0.591
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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