STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3489Multidrug resistance efflux pump (363 aa)    
Predicted Functional Partners:
XCC3487
MFS transporter; Permeases of the major facilitator superfamily
  
 0.984
XCC2341
Outer membrane protein
 
 
 0.805
XCC3490
ElaA protein; Predicted acyltransferase
 
     0.796
codA
Cytosine/adenosine deaminases
       0.770
XCC2342
Transport protein; Permeases of the major facilitator superfamily
 
  
 0.724
oprN1
Outer membrane protein
 
 
 0.719
oprN4
Outer membrane protein
 
 
 0.661
ubiE1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)
       0.629
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily
 
 
 0.623
lrp
Leucine responsive regulatory protein; Transcriptional regulators
   
  
 0.591
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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