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ampB protein (Xanthomonas campestris campestris) - STRING interaction network
"ampB" - Aminopeptidase N in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampBAminopeptidase N (659 aa)    
Predicted Functional Partners:
yrbC
Toluene tolerance protein; ABC-type transport system involved in resistance to organic solvents auxiliary component (221 aa)
         
  0.704
XCC1659
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (665 aa)
           
  0.704
XCC2224
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (645 aa)
           
  0.704
XCC3486
Response regulator; FOG- GGDEF domain (296 aa)
              0.700
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family (327 aa)
 
        0.686
XCC4016
Dipeptidyl-peptidase; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases (815 aa)
 
        0.652
vacJ
Surface lipoprotein (354 aa)
           
  0.609
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (119 aa)
     
 
  0.543
ompP6
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (172 aa)
         
  0.496
XCC3921
Peptidase; Predicted aminopeptidases (602 aa)
   
      0.492
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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